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Mac5
A program for phylogenetic reconstruction using gapped data...
estimate reconstruct reconstruct phylogeny phylogeny reconstruction phylogenetic tree estimator
Phight
Phight - Free and open source phylogeny tree building application...
build diagnose phylogeny phylogeny tree builder build phylogeny tree
Ninja
Tool for inferring large-scale neighbor-joining phylogenies...
codonPhyML
A tool that helps scientists and developers use various Markovian codon models of evolution for phyloge......
analysis phylogeny reconstruction phylogeny reconstruction phylogeny analysis