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Molecular Workbench
Molecular Workbench project is a piece of free, open-source modeling software specifically designed for use in education....
simulation engine simulation workbench molecular molecular simulation
Molecular Viewer Plugin
A cross-platform plugin for display of molecules within web pages...
Biopython
Freely available tools for computational molecular biology....
Python library computational molecular biology molecular biology
QuteMol
QuteMol is an open source, interactive, high quality molecular visualization system....
visualization molecular molecular visualization visualization system OpenGL shaders
Brabosphere
Brabosphere is an OpenSource program for the 3D visualisation of molecular systems and their properties....
3D data analysis molecular 3D visualisation molecular visualisation
Avogadro
An advanced molecular editor...
molecular Chemistry molecular modeling computational chemistry materials science
OpenAtom
A highly scalable and portable parallel application for molecular dynamics simulations at the quantum level....
simulator dynamics molecular molecular dynamics molecular simulator
LAMMPS
LAMMPS project is a Molecular Dynamics Simulator....
dynamics molecular Molecular Dynamics Simulator Dynamics Simulator biomolecules polymers
Bio::MCPrimers
Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene....
Perl module molecular cloning molecular cloning gene cloning
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NoePrimer
A simple yet powerful primer design software...
design molecular primer design primer search molecular applications
NoeClone
The first next-generation molecular cloning tool...
molecular cloning molecular cloning virtual cloning gel simulation
Aipotu
Formerly the Molecular Genetics Explorer...
Explorer molecular biology molecular genetics molecular genetics
CatDCD
CatDCD it concatenates molecular dynamics trajectory files in the DCD format....
Chemistry::File::Formula
Molecular formula reader/formatter...
Geneious
Geneious greatly speeds up and simplifies research in molecular biology and biochemistry....
molecular biology molecular biology molecular biochemistry biology research
MacMolPlt
MacMolPlt is a modern graphics program for plotting 3-D molecular structures and normal modes (vibrations)....
Plotamber
Plotamber is a command line Perl script for an easy and automated plotting of properties derived from molecular dynamics....
Ghemical
Ghemical is a molecular modelling package with GUI and 3D-visualization tools....
modelling molecular molecular modelling modelling package Ghemical