Bioclipse Is based on a plugin architecture that inherits basic functionality and visual interfaces from Eclipse.
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Visual Plugin molecule Client-based architecture bioinformatics visual platform visualize molecular structures bioinformatics chemoinformatics videoclip-based visual

Bioclipse Description

Bioclipse project is aimed at creating a Java-based, open source, visual platform for chemo- and bioinformatics. Bioclipse, as any RCP application, is based on a plugin architecture that inherits basic functionality and visual interfaces from Eclipse, such as help system, software updates, preferences, cross-platform deployment etc. Bioclipse is an applicatiin that provides functionality for chemo- and bioinformatics, and extension points which could be easily extended by plugins to provide added functionality. Main features: Import and export in various file formats Visual editing of molecular 2Dstructures Dvisualization of molecules and proteins Editing and visualization of sequences and features (DNA, RNA, proteins etc) Graphing and editing of various types of spectra, e. g. NMR, MS Retrieval of resources (sequences, proteins, etc) from public data repositories Scripting of 3Dvisualizations with syntax highlighting and content assistance PDBeditor with syntax highlighting for working with PDB files CMLRSSviewer for downloading chemical content published on the web using RSSfeeds Chemtree for displaying a hierarchical view of molecular and macromolecular substructures Visualization of syandard chemical properties Powerful scripting language based on Mozilla Rhino for automating tasks Integrated, searchable helpsystem Connection with external programs, e. g. PyMol

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