ncRNA Mapper Mapping, analyzing and visualizing non-coding RNA sequences
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analyzer Fasta RNA sequence

ncRNA Mapper Description

ncRNA Mapper is a computer program that gives more insight in the localization of sequencing fragments. Given that sequencing of RNA gives reads at fixed base-positions, ncRNA Mapper analyzes the alignments (generated by Short Sequence Location Mapper; SSLM) by: visualizing them, retrieving the conservation of each given nucleotide, predicting the folding (done by centroid_fold), calculating how conserved the fragment is relative to the whole RNA sequence The input that is required to accomplish these methods is SSLM-data, the RNA file where SSLM is based on, and an internet connection to download the conservation tracks. Get ncRNA Mapper and try it for yourself to fully assess its capabilities!

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