msatcommander Locate microsatellite repeats, design locus-specific primers, and tag them
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msatcommander Tags

repeat primer design primer biological repeats microsatellite DNA microsatellite repeat finder tag primer microsatellite disease susceptibility locus large microsatellite data set microsatellite analyzer find Nested Tandem Repeats find microsatellite markers microsatellite markers finder design primers detect DNA repeats DNA repeats detection

msatcommander Description

msatcommander is a Python program written to locate microsatellite (SSR, VNTR, &c) repeats within fasta-formatted sequence or consensus files. msatfinder will search for all di-, tri-, tetra-, penta-, and hexa-nucleotide repeats (with options to search for fewer repeat types and combinations of repeat types). Give msatcommander a try to fully assess its capabilities! Main features: searches for all mono-,di-,tri-,tetra-,penta-, and hexanucleotide repeats repeats may be combined across user-specified distances (bp) designs primers for located repeats tags and tests primers with m13R, CAG, or custom tag. The 'best' primer is reported to the user adds GTTT pigtails to the un-tagged, 'best' primer reported to the user offers a convenient GUI for a majority of users outputs results in csv format, for easy importation to spreadsheet software

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