Transform (Win) often used text & DNA / protein sequence transformations
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protein DNA sequence retrieve protein protein sequence XSL Transformations convert DNA sequence Text Sequence protein identification protein consensus sequence read DNA sequence DNA sequence reader analyze DNA sequence protein crystallization protein translocation protein list protein visualization edit DNA sequence DNA sequence editor view DNA sequence DNA sequence analysis DNA sequence analyzer align DNA sequence compare DNA sequence protein structures refinement validate regulated protein DNA Sequence Manipulation aligned DNA sequence data Genomic DNA sequence analyze protein sequence generate protein sequence logo protein sequence logo creator view protein sequence logo protein-coding DNA sequence compress DNA sequence DNA sequence compression encode DNA sequence DNA sequence compressor compare protein sequence DNA sequence data view protein sequence protein sequence visualization DNA sequence alignment Text File Sequence simulate protein evolution analyze DNA sequence data analyse DNA sequence download protein sequence protein sequence downloader grab protein sequence align protein sequence protein sequence alignment DNA sequence visualization Protein Interaction DNA sequence evolution render protein view protein files protein vizualizer Geometric Transformations

Transform (Win) Description

I find Excel to be brilliant for making pretty sequences and sequence alignments - however each character needs to be in a separate cell So I wrote a little utility to do often used text / sequence transformations: Insert Tab before / after each character Insert Return after each character Keep only letters a-Z Format in blocks of 3, 10, 50, 100 Remove leading / trailing / multiple spaces Reverse / complement/ invert DNA sequence Translate DNA sequence in frame 1 / 2 / 3 Backtranslate protein into human / E. coli DNA (using the most frequently used codon) Convert 3-Letter AminoAcid code into 1-Letter code Convert 1-Letter AminoAcid code into 3-Letter code (spaced / tabbed) Get protein sequence info ... and much more (just ignore the bits you don't need) If there are other transformations you'd like just drop me a line . Please note that this program will run as it is - there is no installation, no files will be put anywhere (registry, system, etc in the Windows version) so it should even run if you are on "managed computers" like we are in our lab (which is a pain in the neck in 99% of all cases - IT support should be there for us, not the other way round) What's new in this version: fixes a serious but spurious bug which could lead to wrong results

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