TFM-ExplorerTranscription Factor Matrix Explorer | |
Download |
TFM-Explorer Ranking & Summary
Advertisement
- License:
- Freeware
- Publisher Name:
- Bonsai Bioinformatics group
- Operating Systems:
- Windows All
- File Size:
- 11.3 MB
TFM-Explorer Tags
TFM-Explorer Description
TFM-Explorer is a program for analysing regulatory regions of eukaryotic genomes. It takes a set of coregulated gene sequences, and search for locally overrepresented transcription factor biding sites. The algorithm proceeds in two steps: · scans sequences for detecting all potential transcription factor binding sites, using weight matrices from JASPAR or TRANSFAC · extracts significant clusters (region of the input sequences associated with a factor) by calculated a score function TFM-Explorer allows also to visualize the result clusters and their putative transcription factor biding sites on the input sequences, and to search for cis-regulatory modules. Get TFM-Explorer and give it a go to see what it can actually do for you!
TFM-Explorer Related Software