SmartRoot A semi-automated root image analysis program.
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Analyze image root trace algorithm

SmartRoot Description

Semi-automated root image analysis software SmartRoot is a semi-automated image analysis software which streamlines the quantification of root growth and architecture for complex root systems. The software combines a vectorial representation of root objects with a powerful tracing algorithm which accommodates to a wide range of image source and quality. The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according to specific research requirements. SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis software. Features * Wide range of image type and quality * All plant species * Mature root systems * Time-series * Actions on several traced roots * Basic plot generator * SQL database export * CSV export * Various types of root annotations * Platform-independent * ImageJ plugin SmartRoot is : * Semi-automated * Platform-independent (Windows, Mac OSX, Linux) * Free SmartRoot works with: * Wide range of image type and quality * All plant species * Mature root systems * Time-series SmartRoot built-in tools: * Actions on several traced roots * Basic plot generator * SQL database export * CSV export * Various types of root annotations Measured traits: * Root length * Root diameter * Root insertion angle * Lateral density * Interbranch distance * Growth * Root direction * etc Requirements * Java 1.5 or higher * ImageJ 1.44 or higher * At least 1024M of RAM

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