DNA Dragon DNA Sequence Contig Assembler Software
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DNA Dragon Tags

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DNA Dragon Description

DNA Dragon is an advanced DNA utility that can handle more than 100000 samples from sequence formats (FASTA, EMBL, GenBank, etc.), trace file formats (SCF, ABI, AB1) and next generation sequencing file formats (Illumina, SFF, GFF, etc). Note: The trial can be activated using the "license button" in the software. Main features: Reads the most popular sequence formats: (FASTA, GenBank, EMBL, SCF, ABI, AB1, SSF, Next Generation). Multiple trimming features: vector, quality and length trimming. Fast assembly machine handles projects with more than 100000 sequences. Supported file formats: Project files: XML DNA Dragon XML project (*.XML) Sequence file formats: EMBL (*.eb;*.ebi;*.embl) GenBank (*.gb;*.gen;*.genbank;*.txt) FASTA (*.fa;*.fas;*.fast;*.fasta;*.fs;*.fsa;*.fsta) Next generation sequencing file formats: ABI SOLiD files (*.gff) SOLiD CSFASTA files (*.csfasta) Solexa Compact ASCII Read Format, SCARF (s_*_sequence.txt) Illumina _seq.txt files (*.txt) Illumina FASTQ files (*.fastq) Illumina Qseq files (*_qseq.txt) 454 standard flowgram files (*.sff) Alignment file formats: Sequence Alignment/Map (SAM) Format (*.sam) Binary Alignment Format (*.bam) (*.bam) Trace file formats: SCF (*.scf) ABI (*.abi;*.ab1) Navigator tree: A sample navigator tree makes the project structure (contigs and samples) very clear. From here the samples are selected, then trimmed and assembled. Trimming and untrimming features: Primer-Clipping Vector-Clipping with automatic pseudocircularization (50 bases). You can detect putative vector motifs in the sequences without any previous knowledge. Sequence quality-based trimming Length trimming Untimming: restores clipped ends. Assembly machine and contig editor: Various options to change the assembly parameters are available. The fast, index-based assembly of sequences with automatic sorting of the sequences within the contigs (offset and trim ends) makes the project management a pleasure. The proofreading of the contigs (sequence alignment), i.e. comparison of bases with their traces, and the export/copy of the consensus sequences is almost self-explanatory.

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