 | PoSSuMsearch |
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PoSSuMsearch Ranking & Summary
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- License:
- Freeware
- Publisher Name:
- Bielefeld University
- Publisher web site:
- http://bibiserv.techfak.uni-bielefeld.de/
- Operating Systems:
- Mac OS X 10.5 or later
- File Size:
- 248 KB
PoSSuMsearch Tags
PoSSuMsearch Description
Helps you make faster database searches with HMMs PoSSuMsearch is a free and easy to use software that provides a significant speedup of database searches with HMMs by search space reduction with PSSM family models.When searching with a PSSM it is very important to determine a suitable threshold for a PSSM match. Usually, the user prefers to specify a significance threshold (i.e., an E-value or a p-value) which has to be transformed into an absolute score threshold for the PSSM under consideration. This can be done by computing the score distribution of the PSSM, using well-known dynamic programming (DP, for short) methods, e.g., . NOTE: PoSSuMsearch is available free of charge for non-commercial research institutions.
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