BioclipseOpen source workbench for chemo and bioinformatics built on the Eclipse Rich Client Platform (RCP) | |
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Bioclipse Ranking & Summary
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- License:
- Freeware
- Price:
- FREE
- Publisher Name:
- Miro International Pty Ltd
- Publisher web site:
- http://www.bioclipse.net/
- Operating Systems:
- Mac OS X
- File Size:
- 86.5 MB
Bioclipse Tags
Bioclipse Description
Open source workbench for chemo and bioinformatics built on the Eclipse Rich Client Platform (RCP) Bioclipse, as any RCP application, is based on a plugin architecture that inherits basic functionality and visual interfaces from Eclipse, such as software updates, preferences, help system, cross-platform deployment etc.Bioclipse will provide functionality for chemo and bioinformatics, and extension points that easily can be extended by plugins to provide added functionality. The first version of Bioclipse includes a CDK-plugin (bc_cdk) to provide a chemoinformatic backend, a Jmol-plugin (bc_jmol) for 3D-visualization and a general logging plugin.NOTE: Bioclipse is licensed and distributed under the terms of the Eclipse Public License. Here are some key features of "Bioclipse": · Import and export in various file formats · Visual editing of molecular 2D-structures · 3D-visualization of molecules and proteins · Editing and visualization of sequences and features (DNA, RNA, proteins etc) · Graphing and editing of various types of spectra, e. g. NMR, MS · Retrieval of resources (sequences, proteins, etc) from public data repositories · Scripting of 3D-visualizations with syntax highlighting and content assistance · PDB-editor with syntax highlighting for working with PDB files · CMLRSS-viewer for downloading chemical content published on the web using RSS-feeds · Chemtree for displaying a hierarchical view of molecular and macromolecular substructures · Visualization of syandard chemical properties · Powerful scripting language based on Mozilla Rhino for automating tasks · Integrated, searchable help-system · Connection with external programs, e. g. PyMol
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