UNIVERSAL

Systems biology code translation tool
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UNIVERSAL Ranking & Summary

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  • Rating:
  • License:
  • MIT License
  • Publisher Name:
  • Jeffrey Varner
  • Publisher web site:
  • http://code.google.com/u/105953072772446189322/
  • Operating Systems:
  • Mac OS X 10.6 or later
  • File Size:
  • 21.1 MB

UNIVERSAL Tags


UNIVERSAL Description

UNIVERSAL is a free and open-source, client-server Java tool for generating mathematical model code from a variety of input formats to one of several output formats. For example, the input formats, a comma delimited flat-files are read by Universal and converted into an Systems Biology Markup (SBML) tree in memory on the server. From the SBML tree, model code is generated in the C-programming language (GSL, SUNDIALS or an Octave C-module) or in Matlab M-code, Octave M-code or Scilab. Moreover, because it is extensible, a number of plugin modules have been developed, for example, SBML to GraphViz dot format for network visualisation. UNIVERSAL includes both a Graphical User Interface (GUI) and a code generation engine (CGE). The GUI is written in objective-C/Cocoa while the CGE is Java based.


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