Tandemizer Free and open source tool that allows you to visualize whole-genome arrangement
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visualize visualizer genome visualize arrangement genome arrangement genome visualizer

Tandemizer Description

Free and open source tool that allows you to visualize whole-genome arrangement Tandemizer, which uses output from the MUMmer suite "exact-tandems" program, combined with whole-genome sequences and optional GenBank files, to graphically compare TABs among two or more prokaryotic whole genomes.Tandemizer is an extensible, flexible tool that allows visualization of whole-genome arrangement among many genomes based upon TABs, with correlations to GenBank annotations for genes and other features, and drill-down to the sequence level for polymorphism analysis. Tandemizer has been used to search for correlations with markers for virulence and antibiotic resistance, to visually assess degree of relatedness among the genomes of Staphylococcus, Streptococcus and Francisella, and to assess relationship of IS elementNOTE: Tandemizer is licensed and distributed under the terms of the Academic and Research License. Requirements: · Java

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