JSpecies

Easy to use and Java based tool to to measure the probability if two genomes belong to the same species or not
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JSpecies Ranking & Summary

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  • Rating:
  • License:
  • GPL
  • Price:
  • FREE
  • Publisher Name:
  • Marine Microbiology Group
  • Publisher web site:
  • http://www.imedea.uib-csic.es/erm/mmg/DEPARTAMENTO/INDEX.html
  • Operating Systems:
  • Mac OS X
  • File Size:
  • 4.2 MB

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JSpecies Description

Easy to use and Java based tool to to measure the probability if two genomes belong to the same species or not JSpecies is a free, Java based, easy to use, and biologist-centric software designed to measure the probability if two genomes belong to the same species or not.JSpecies is able to calculate the average nucleotide average (ANI) based on BLAST (ANIb) and MUMmer (ANIm). ANI values are based on pairwise alignment of the genome stretches. The reliability of their results is directly dependent on the quantity and quality of the aligned DNA fragment. Requirements: · At least 512Mb of RAM · Java


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